miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125466789|gb|EL478482.1|EL478482 GGGGTTGCATTGTCCACTCAACTCCACCACCATCACAGCAACCGGCGAAATGGCCTCGAAATTGTGTTTCGCCATAGCCT
CTTCTCGTTTCGTCACTGCTCCGGTTCGGAGACCCTCTGCTGGTTTATCTTTATCCGGTTCGTATCGGTTGGCTGGGTCC
AATGATCAGTCGATCAAGATGATCGGACGAGAGGTTGCGATTCGACGGAGATTGATTTTTATTTCCCCACAGGCCACTAG
TGATCAGCCAGGTAAAGTTGAAGATGAATTTACTGCAGATTCTGTTGATAGCAACATAATGCCTTACTGCAGCTTAGAAC
AGAAGAAGAAAACAATTGGAGAAATGGAACAAGAATTTCTTCAAGCATTACAGGCATTCTATTACGAAGGCAAAGCTATC
ATGTCGAACGAGGAATTTGATAATCTCAAGGAGGAACTAATGTGGGAAGGAAGCAGTGTTGTAATGCTAAGCTCTGATGA
ACAGAAGCTTCTAGAGGCTACGATGGCGTACATATCTGGTAACCCAATAATGAGTGATGTAGAGTTTGACAACCTGAAAA
AACAACTAAAGAAAGATGGAAGTGATATAGTGGCTGAGGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTACAGTGAC
CTGACTGTTGATTACCTCAAAATGTTCCTCATAAATGTCCCAGCTGCTGTTGTTGCAGTAGGATTATTCTTCTTCTTGGA
CGACATTACTGGGTTTGAAATTACATACCTTTTGGAGCTTCCAGAGCCATTTAGTTTTATCTTCACTTGGTTCGCGGCTC
TGCCGTTCA




Most similar to sp|Q8H112|PGL1A_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic
           OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1
          Length = 324

 Score =  328 bits (840), Expect = 4e-89
 Identities = 167/254 (65%), Positives = 207/254 (81%), Gaps = 2/254 (0%)
 Frame = +2

Query: 50  MASKLCFAIASSRFVTAPVRRPSAGLSLSGSYRLAGSNDQSIKMI-GREVAIRRRLIFIS 226
           M SK+ F++ S R  +A  R+PS+  S S S     S  Q  ++  G+ +++RRR+  + 
Sbjct: 1   MGSKMLFSLTSPRLFSAVSRKPSS--SFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLP 58

Query: 227 PQATSDQPGKVEDEFTADSVDSNIMPYCSLEQ-KKKTIGEMEQEFLQALQAFYYEGKAIM 403
            +AT++Q G V      D+VDSN++PYCS+ + +KKTIGEMEQEFLQALQ+FYY+GKAIM
Sbjct: 59  AKATTEQSGPVG----GDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIM 114

Query: 404 SNEEFDNLKEELMWEGSSVVMLSSDEQKLLEATMAYISGNPIMSDVEFDNLKKQLKKDGS 583
           SNEEFDNLKEELMWEGSSVVMLSSDEQ+ LEA+MAY+SGNPI++D E+D LK +LK DGS
Sbjct: 115 SNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGS 174

Query: 584 DIVAEGPRCSLRSRKVYSDLTVDYLKMFLINVPAAVVAVGLFFFLDDITGFEITYLLELP 763
           DIV+EGPRCSLRS+KVYSDL VDY KM L+NVPA VVA+GLFFFLDDITGFEITY++ELP
Sbjct: 175 DIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELP 234

Query: 764 EPFSFIFTWFAALP 805
           EP+SFIFTWFAA+P
Sbjct: 235 EPYSFIFTWFAAVP 248